INSTRUCTIONS FOR USE For Use Under The Emergency Use . - Facible

Transcription

INSTRUCTIONS FOR USEFor use under the Emergency Use Authorization (EUA) onlyFor in vitro diagnostic useFacible Q-LAAD SARS -CoV-2 TestIntended UseFacible’s Quantum-Logic Aptamer Analyte Detection (Q-LAAD) SARS-CoV-2 test is a high throughputfluorescence-based test. This test is designed for use with fluorescence microplate readers capableof fluorescence measurements and is intended for the qualitative detection of the spikeprotein antigen from SARS-CoV-2. The test uses anterior nares swab specimens stored in salinesolution from individuals who are suspected of COVID-19 by their healthcare provider. Thesespecimens are to be collected within the first 7 days of symptom onset or for screening exposedindividuals without symptoms. Results in asymptomatic individuals have not been fully evaluated.The results are generally expected to detect Spike protein if present in individuals withoutsymptoms or other epidemiological reasons to suspect COVID-19 infection, when tested twice overtwo (or three) days with at least 24 hours (and no more than 36 hours) between tests. Testing islimited to laboratories certified under the Clinical Laboratory Improvement Amendments of 1988(CLIA), 42 U.S.C. §263a, that meet the requirements to perform moderate complexity. This test is notfor use in Point of Care (POC) settings, in low complexity labs, or for use in CLIA waived laboratorysettings.Results are for the identification of SARS-CoV-2 Spike protein antigen. The antigen is generallydetectable in upper respiratory specimens during the acute phase of infection. Positive resultsindicate the presence of viral antigens, but clinical correlation with patient history and otherdiagnostic information is necessary to determine infection status. Positive results do not rule outbacterial infection or co-infection with other viruses. The agent detected may not be the definitecause of disease. Laboratories within the United States and its territories are required to report allpositive results to the appropriate public health authorities.Negative results should be treated as presumptive, and do not rule out SARS-CoV-2 infection andshould not be used as the sole basis for treatment or patient management decisions, includinginfection control decisions. Negative results should be considered in the context of a patient’srecent exposures, history, and the presence of clinical signs and symptoms consistent with COVID19, and confirmed with a molecular assay, if necessary, for patient management.The Q-LAAD SARS-CoV-2 test is intended for use by trained clinical laboratory personnel specificallyinstructed and trained in vitro diagnostic procedures. The Q-LAAD SARS-CoV-2 test is only for useunder the Food and Drug Administration’s Emergency Use Authorization.1

Overview and Test PrincipleThe Facible Q-LAAD SARS-CoV-2 high-throughput test is an aptamer-based fluorescence test.Based on our revolutionary Quantum-Logic Aptamer Analyte Detection (Q-LAAD) platform, ourQ-LAAD SARS-CoV-2 test is designed to detect the SARS-CoV-2 antigen in anterior naresswabs collected in 0.9% saline solution from patients who are suspected of having COVID-19 bytheir healthcare provider within the first 7 days of symptom onset or for screening of individualswithout symptoms or other reasons to suspect COVID-19 infection. Facible’s Q-LAAD SARS-CoV2 test was specifically engineered to work on standard laboratory equipment using readilyavailable materials and fit within standard medium-complexity laboratory workflows.We have developed an aptamer with two distinct binding pockets that are made allostericthrough a communication linker. This type of aptamer is called a Fluorogenic Logic-gatedAptamer (FLA). We developed this dual-logic aptamer has to allow for an easy and accuratedetection of the binding of the target SARS-CoV-2 spike protein. The specific binding of SARSCoV-2 spike protein triggers the folding of the second “logic” binding pocket to enable binding ofa reporter molecule (or fluorophore). We have attached the biotin modified FLA to the plasticsurface in the bottom of each well of standard 96-well microplates using biotin-Streptavidinchemistry. The biotin-streptavidin arrives to the customer already conjugated and ready to beused. No conjugations steps are needed by the technologist to perform this assay.This test does not have a sample extraction or preparation steps that require specificinstruments or reagents to incubate the sample for analyte detection, reducing test complexity.The sample is simply added directly to the wells containing buffer and incubated for 10 minutesat room temperature. After specimen incubation and removal of unbound sample, the detectionreagent is added. The detection reagent contains a fluorogenic small molecule which issubsequently recognized and bound by the second logic pocket. The second binding of thefluorophore is conditional upon binding of the SARS-CoV-2 spike protein. Once the fluorophoreis bound, a change in fluorescent signal is measured using a microplate reader at the endpointof the 5-minute room temperature incubation.Our high throughput Q-LAAD SARS-CoV-2 test combines the speed and relative simplicity of anantigen test with the sensitivity of a molecular test. This fluorescence-based assay utilizes a 96well plate format that will fit into the normal workflow of any moderate complexity lab. The test iseasy to setup, it is significantly faster for the technician to prepare, and requires only 5 minuteson the instrument. The BioTek plate reader with Gen5 software provides results withouttechnician interpretation. With an optimized workflow, Facible’s Q-LAAD SARS-CoV-2 assay canyield a throughput of 348 of tests per hour per instrument.2

FOR USE UNDER EMERGENCY USE AUTHORIZATION ONLYThe Q-LAAD SARS-CoV-2 test produced by Facible Biodiagnostics, LLC. offers this product with anFDA Emergency Use Authorization (EUA). This means that this product has not been FDA cleared orapproved but has been authorized for emergency use by FDA under and EUA. This product has beenauthorized only for anterior nasal swab specimens as an aid in detection Spike protein antigen fromSARS-CoV-2, not for any other viruses or pathogens. The emergency use of this product is onlyauthorized for the duration of the declaration that circumstances exist justifying the authorizationof emergency use of medical devices for detection and/or diagnosis of COVID-19 under Section564(b) (1) of the Federal Food, Drug, and Cosmetic Act, 21 U.S.C. § 360bbb-3(b)(1), unless thedeclaration is terminated, or authorization is revoked sooner.WARNING Failure to follow the test procedure may adversely affect test performance and /or invalidate thetest result. Use of appropriate PPE is requiredFor in vitro diagnostic use onlyUse appropriate precautions in the collection, handling, storage, and disposal of patient samplesand used kit contentsDo not reuse the used 96-well Microplate, Fixed Volume Pipettes, Reagent Tubes, solutions, or ControlsThe user should never open the foil pouch of the 96-well Microplate exposing it to the ambientenvironment until it is ready for immediate useThe reagent solution contains a salt solution (saline). If the solution contacts the skin or eye, flushwith water. If irritation persists, seek medical advice.Keep out of reach of children50% EtOH dye is flammable. Keep away from heat, sparks, and open flamesA negative test result may occur if the concentration of antigen is below the limit of detection at thetime of collection.Do not use if the kit or any items included within it, are damaged/ faulty, or if any items are absentfrom the kitThis Q-LAAD SARS-CoV-2 test kit has not been FDA cleared or approved but has been authorized foremergency use by FDA under an EUA.This Q-LAAD SARS-CoV-2 test kit has been authorized only for maintenance of anterior nares swabspecimens as an aid in detection of the Spike-1 protein antigen from SARS-CoV-2, not for any otherviruses or pathogen The emergency use of this Q-LAAD SARS-CoV-2 test kit is only authorized for the duration of thedeclaration that circumstances exist justifying the authorization of emergency use of in vitrodiagnostics under Section 564(b)(1) of the Federal Food, Drug and Cosmetic Act, 21 U.S.C. §360bbb-3(b)(1), unless the declaration is terminated, or authorization is revoked sooner.3

CAUTION Avoid cross contamination between wellsAvoid scaping probe during pipettingDo not use variations of transport media other than 0.9% saline solutionTo avoid plate orientation error, make sure cut corners on plate are facing userMATERIALS INCLUDEDComponentQ-LAAD CoV-2 Probe PlateDescriptionFunctionalized microplate containingbound DNA aptamer for the detectionof SARS-CoV-2Quantity(5) Individual plates, foilpackaged withdesiccant.Q-LAAD CoV-2 BufferpH 7.5, Sterile, salt-based buffer.Q-LAAD CoV-2 DetectionReagentMicroplate Seals5 µM reporter molecule in solution of50% ethanol.Acrylic, Adhesive, Clear seal to preventmicroplate spillage.Instructions for useSolution containing recombinantSpike-1 protein with cryoprotectant.Solution of suspended cell lysate withcryoprotectant(1) bottle of 250 mLtotal volume.(1) 2 mL bottle of 500 µLtotal volume(1) Package containing5 Microplate sealers(1) paper pamphlet(1) vialPackage insertPositive Quality ControlsolutionNegative Quality ControlSolution(1) vialSPECIAL INSTRUMENT REQUIREDThe Q-LAAD SARS-CoV-2 test is to be used with BioTek Microplate Reader BioTek Custom Filter Cube: Excitation wavelength 575 10nm; Dichroic mirror 595 nm,Emission wavelength 610 10nm BioTek Gen5 Software Features for Detection; microplate reading and data analysis4

Materials Required but not renePipette BasinArgos Polystyrene, 55 mL capacity, Sterile,White, DNase-RNase free, Non-pyrogenic,5 per pack, Used for Q-LAAD Buffer orsimilarIntegra Polypropylene, 25 mL, 200 perpack, Used for Q-LAAD Detection Reagentor similar0.9% Saline solution, 3mL in 10mL Tube,50/pack or similarFlocked, Sterile, Nylon Fiber, individuallywrapped or similar70% purity, ethanol solution, MolecularBiology grade, CAS#64-17-5 or similarep Dualfilter T.I.P.S. LoRetention , PCRclean and sterile, 0.1 – 10 µL S, 34 mm,dark gray, colorless tips, 960 tips (10racks 96 tips) or similarep Dualfilter T.I.P.S. LoRetention , PCRclean and sterile, 2 – 200 µL, 55 mm,yellow, colorless tips, 960 tips (10 racks 96 tips) or similarep Dualfilter T.I.P.S. LoRetention , PCRclean and sterile, 50 – 1,000 µL, 76 mm,blue, colorless tips, 960 tips (10 racks 96 tips) or similarGilson, PIPETMAN L Multichannel,P12x10L, 12 channel, 0.5-10 µL or A10014GEppendorf Research plus, 8-channel,variable, incl. epT.I.P.S. Box,10 – 100 µL, yellow or similarGilson, PIPETMAN L Multichannel,P12x300L, 12 channel, 20-30 0µL cFA10016GPolypropylenePipette BasinSalineCollection VialCollectionSwabEthanolPipette Tips,0.1 – 10 µLPipette Tips, 2– 200 µLPipette Tips,50 – 1000 µLMultichannelPipette, 0.5 –10 µLMultichannelPipette, 10 –100 µLMultichannelPipette, 20 –300 µL522-349-820BP20150005-413-959

Kit Storage and StabilityStore the microplates at 4 deg Celsius.Positive Control material should be stored at frozen -20 CelsiusStore all other components at room temperatureBiotek Synergy Lx Microplate Reader Configuration See Biotek configuration instructions for step-by-step detailsSummary of Microplate ConfigurationRead: Fluorescence Endpoint, Full Plate Filter Set 1 (575/610) Excitation 575/10, Emission: 610/10 Mirror: Top 595 nm, Gain: 70 Light Source Tungsten Sta EUA RT-qPCR method,used as comparator method for the study. All testing was conducted by operators blinded to thereference RT-PCR result, which was conducted on anterior nares swabs collected as part of thestandard of care testing.Positive samples by days onset symptomsNot DetectedDetectedTotal% Correct4182282%066100%022100%Q-LAADDays1-34-56-7 -Comparator PCR 262438SensitivitySpecificity87%95%Limit of Detection (LoD) - Analytical Sensitivity:LoD studies determine the lowest detectable concentration of SARS-CoV-2 at whichapproximately 95% of all (true positive) replicates test positive. The LoD was determined bylimiting dilution studies using characterized anterior nares clinical positive specimen. Theclaimed LOD is 36 genome equivalents / mL (N-gene Ct 34).LoD Range s(GE/mL)3.40E 029.90E 012.88E 018.39E 002.44E 007.11E-012.07E-019Agreement3/33/33/31/33/31/32/3

LoD ConfirmationViral Concentration (GE/mL)3.61E 017.22E 00Positive Results (n 20)20/2016/20Cross-Reactivity and Interference by microorganismsConclusion: Cross-reactivity was observed for Mycoplasma pneumoniae at worst-case scenarioconcentration. To determine the concentration of Mycoplasma pneumonia that does not crossreact, a dilution study was performed. The results of the serial dilution showed that no crossreactivity was observed at concentrations less than 105 CFU. No cross-reactivity was observed forall remaining microbes tested. No microbiological interference was observed with pooled microbestested.*No cross-reactivity was detected for SARS-CoV, however the in silico comparison between SARSCoV-2 surface glycoprotein and SARS-CoV indicate a moderate level of homology and crossreactivity may be likely.**No cross reactivity was detected for MERS or Human Coronavirus NL63, and in silico comparisonshow low sequence homology to SARS-CoV-2, which suggest that cross-reactivity is eRhinovirusB632IsolateHaemophilusinfluenzaeRd spneumoniaeStreptococcuspyogenes262 [CIP104340](Klein)ChesterBruno [CIP104226]CatalognumberATCC Cat#VR-740ATCC Cat#VR-1558ATCC Cat#VR-1645ATCC Cat#51907IsolateConcentration 1.00E 050/33/31.00E 050/33/31.00E 050/33/31.00E 060/33/3IsolateATCC Cat#496191.00E 060/33/3IsolateATCC Cat#196151.00E 060/33/310

CandidaalbicansCBS 562[572, CCRC20512,CECT 1002,DBVPG6133, IFO1385, IGC3436, JCM1542, NCYC597, NRRLY-12983]IsolateATCC Cat#188041.00E 060/33/3Pooled humannasal swabN/AN/AN/AN/A0/33/3Adenovirus 5Adenoid 75Isolate1.00E 050/33/3Parainfluenzavirus 3Parainfluenzavirus 1Influenza A(H1N1)ATCC-20115Isolate1.00E 050/33/3C35Isolate1.00E 050/33/3A/WS/33Isolate1.00E 050/33/3Influenza BB/Florida/78/2015Isolate1.00E 050/33/3EnterovirusHIsolate1.00E 050/33/3Respiratorysyncytial virusLongIsolate1.00E phylococcusaureus18323[NCTC10739]Eaton Agent[NCTC10119]NCTC 8532[IAM 12544,R. Hugh2605]ATCC Cat#VR-1516ATCC Cat#VR-1782ATCC Cat#VR-94ATCC Cat#VR-1520ATCC Cat#VR-1931ATCC Cat#VR-1432ATCC Cat#VR-26IsolateATCC Cat#97971.00E 060/33/3IsolateATCC Cat#155311.00E 061/33/3IsolateATCC Cat#126001.00E 060/33/31.00E 060/33/30/33/30/33/3StaphylococcusepidermidisFDA strainPCI 1200**HumancoronavirusNL63 (heatinactivated)IsolateParainfluenzavirus 2GreerIsolateATCC Cat#CRM-12228ZeptoMetrixCat#0810228CFHIATCC Cat#VR-92Isolate111.70E 05TCID50/mL1.00E 05

Parainfluenzavirus 4bInfluenza diaceae,ChlamydiaLegionellapneumophila19503BEI Cat#3238ATCC Cat#VR-1679Isolate1.00E 050/33/31.00E 050/33/3BEI Cat# NR505491.00E 050/33/3BEI Cat# NR93231.00E dTN/83-1211IsolateBEI Cat# NR222271.00E 50/33/3AR-39IsolateATCC Cat#535921.00E 060/33/3IsolateATCC Cat#350961.00E 040/33/3Concord 3[NCTC11985]Isolate12

In-silico analysisCompared to SARS-CoV-2 spike 1 amino acid sequence (QSJ03236.1)OrganismMethodPneumocystis jirovecii (taxid: 42068)BLASTMycobacterium tuberculosis (taxid:1773)BLASTHuman Coronavirus HKU1(taxid:168471)BLASTMERS surface glycoprotein(ASJ26610.1)Human Coronavirus NL63 spikeprotein (BBL54116.1)Percent identityNo significantproteinsequencehomologyNo significantproteinsequencehomologyNo significantproteinsequencehomologyProbabilityof likely13

Endogenous Interference Substances StudiesConclusion: Studies were performed to demonstrate that these 19 potentially interfering substances donot cross-react or interfere with the detection of SARS-CoV-2 in the Facible Q-LAAD SARS-CoV-2 assayat the stated concentrations. Low viral-load positive samples were used at 1-3x LoD (GE 36/mL – GE76/mL). No interfering substances were observed at the following tsInterferenceResultsAfrinOxymetazoline5% v/v0/33/3AzithromycinAzithromycin250 ug/mL0/33/3Blood (Human)Blood0.005% v/v0/33/3ChroaspeticMenthol1.5 mg/mL0/33/3ClathromycinClathromycin1 mg/mL0/33/3FlonaseFluticasonePropionate5% v/v0/33/31:10 dilution0/33/30.1% , methylsalicylateMucinPurified mucinprotein2.5 mg/mL0/33/3MupirocinMupirocin1 mg/mL0/33/3Nasal DropsPhenylephrinehydrochloride15% v/v0/33/3Nasal SprayCromolyn15% v/v0/33/3NelimedHyaluronic Acid5% v/v0/33/3Phenol5% v/v0/33/3Phenol ThroatSpraySaline NasalSprayTamifluSaline5% v/v0/33/3Oseltamivir1 mg/mL0/33/3TobramycinTobramycin4 mg/mL0/33/3ZicamOxymetazolinehydrochloride1% v/v0/33/3Zicam All e0.5% v/v0/33/314

High-dose Hook EffectConclusion: A High-dose Hook Effect was not observed at the highest tested concentration of 1.13 x 108genome copies/mL.Quick Reference instructions:See Facible Q-LAAD SARS-CoV-2 Quick Start Guide/Package Insert15

2 Overview and Test Principle The Facible Q-LAAD SARS-CoV-2 high-throughput test is an aptamer-based fluorescence test. Based on our revolutionary Quantum-Logic Aptamer Analyte Detection (Q-LAAD) platform, our Q-LAAD SARS-CoV-2 test is designed to detect the SARS-CoV-2 antigen in anterior nares swabs collected in 0.9% saline solution from patients who are suspected of having COVID-19 by